For anyone else who has ever had the problem where the tray icon for the task manager shows up only intermittently, I've found out what causes it: Setting the processor scheduling to "Background processes." More specifically, setting Win32PrioritySeparation to use fixed-length intervals, and to a lesser extent, using longer intervals causes the icon to sometimes not show up. Makes me wonder what other wierd effects those settings might have...
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XP task manager tray icon
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